Lab Meetings

For the Fall 2021 Semester, we will meet on Wednesdays 8:00-8:50am on Zoom.

Previous meeting notes

Notes from previous semesters

Helpful Computer Information

Goals

  • Start preparing for presentations in the Fall
    • Train on poster template
    • Train how to use Databrary API
  • Data science
    • Learn R on Datacamp
    • Learn more about jupyter notebooks and Python
  • Launch new projects
  • Data Processing/Analysis projects
    • Sex Differences: Visual Data vs. survey/Hobbies data
    • Datavyu Coding of infant locomotion

Spring 2022

3/30/2022

  • Attending: Rick, Andrea, Yiming, Molly, Maggie, Kavya, Kayla, Belle, Shahir, Lakshmi

    • Excused: Anjali
    • Missing: Kym

  • Discuss: Silberzahn, R., Uhlmann, E. L., Martin, D. P., Anselmi, P., Aust, F., Awtrey, E., Bahník, Š., Bai, F., Bannard, C., Bonnier, E., Carlsson, R., Cheung, F., Christensen, G., Clay, R., Craig, M. A., Dalla Rosa, A., Dam, L., Evans, M. H., Flores Cervantes, I., … Nosek, B. A. (2018). Many analysts, one data set: Making transparent how variations in analytic choices affect results. Advances in Methods and Practices in Psychological Science, 1(3), 337–356. https://doi.org/10.1177/2515245917747646

  • Homework:

    • Complete any outstanding items you have on ASANA.

3/23/2022 Meeting Cancelled

Homework:

  • Read: Silberzahn, R., Uhlmann, E. L., Martin, D. P., Anselmi, P., Aust, F., Awtrey, E., Bahník, Š., Bai, F., Bannard, C., Bonnier, E., Carlsson, R., Cheung, F., Christensen, G., Clay, R., Craig, M. A., Dalla Rosa, A., Dam, L., Evans, M. H., Flores Cervantes, I., … Nosek, B. A. (2018). Many analysts, one data set: Making transparent how variations in analytic choices affect results. Advances in Methods and Practices in Psychological Science, 1(3), 337–356. https://doi.org/10.1177/2515245917747646

  • Complete any outstanding items you have on ASANA. Everyone check as some training certificates have recently expired.

  • Email the 3 courses you will take on Datacamp BEFORE the end of semester to so they can be assigned to you

3/9/2022 Enjoy your Spring Break!

3/2/2022

  • Attending: Rick, Andrea, Yiming, Molly, Maggie, Kavya, Anjali, Belle, Shahir, Lakshmi
    • Missing: Kayla, Kym
  • Agenda:
    • Discuss reading reproducibility papers over the next few weeks. Here is the schedule:
      • Discuss on 3/16/2022: Errington, T. M., Mathur, M., Soderberg, C. K., Denis, A., Perfito, N., Iorns, E., & Nosek, B. A. (2021). Investigating the replicability of preclinical cancer biology. eLife, 10, e71601. https://doi.org/10.7554/eLife.71601
      • Discuss on 3/23/2022: Open Science Collaboration. (2015). Estimating the reproducibility of psychological science. Science, 349(6251), aac4716. https://doi.org/10.1126/science.aac4716
      • Discuss on 3/30/2022: Camerer, C. F., Dreber, A., Holzmeister, F., Ho, T.-H., Huber, J., Johannesson, M., Kirchler, M., Nave, G., Nosek, B. A., Pfeiffer, T., Altmejd, A., Buttrick, N., Chan, T., Chen, Y., Forsell, E., Gampa, A., Heikensten, E., Hummer, L., Imai, T., … Wu, H. (2018). Evaluating the replicability of social science experiments in Nature and Science between 2010 and 2015. Nature Human Behaviour, 1. https://doi.org/10.1038/s41562-018-0399-z
      • Discuss on 4/6/2022: Silberzahn, R., Uhlmann, E. L., Martin, D. P., Anselmi, P., Aust, F., Awtrey, E., Bahník, Š., Bai, F., Bannard, C., Bonnier, E., Carlsson, R., Cheung, F., Christensen, G., Clay, R., Craig, M. A., Dalla Rosa, A., Dam, L., Evans, M. H., Flores Cervantes, I., … Nosek, B. A. (2018). Many analysts, one data set: Making transparent how variations in analytic choices affect results. Advances in Methods and Practices in Psychological Science, 1(3), 337–356. https://doi.org/10.1177/2515245917747646
  • Homework: Due 3/16/2022
    • Read: Errington, T. M., Mathur, M., Soderberg, C. K., Denis, A., Perfito, N., Iorns, E., & Nosek, B. A. (2021). Investigating the replicability of preclinical cancer biology. eLife, 10, e71601. https://doi.org/10.7554/eLife.71601
    • Complete any outstanding items you have on ASANA. Everyone check as some training certificates have recently expired.
    • Email the 3 courses you will take on Datacamp BEFORE the end of semester to so they can be assigned to you

2/23/2022

  • Attending: Rick, Andrea, Yiming, Molly, Anjali, Kayla, Belle,Lakshmi
    • Excused: Bowen, Kavya, Shahir
    • Missing: Maggie, Kym
  • Agenda: Begin Data Science for Everyone as a group

2/16/2022

  • Attending: Rick, Andrea, Yiming, Molly, Maggie, Kavya, Anjali, Kayla, Belle, Shahir, Lakshmi, Kym

  • Agenda: Short meeting, gift of time due to many exams and THON

2/9/2022

  • Attending: Rick, Andrea, Yiming, Molly, Maggie, Kavya, Anjali, Kayla, Belle, Shahir, Lakshmi, Kym

  • Agenda:

    • Remember to check discord at least twice a week, Mondays and fridays
    • remember to pick 3 courses on datacamp
    • overview of Dryad

  • Homework:

    • Review Dryad
      • Note items such as: business model/funding, technical abilities, data curation services, how many staff members, what are the data about, file types (e.g., text, video, MRI, EEG), what is included in the data description.
    • Find one dataset on this repository that you may be interested in learning more about
    • Log into Asana to see if you have any outstanding assignments.
    • Reminder: Completion of assignments, attendance and participation at meetings are all part of determining your grade for the semester. The requirements are the same if you are a volunteer.

  • Next Meeting

    • we will download one of the datasets on Dryad and look at it in detail

2/2/2022

  • Attending: Rick, Andrea, Yiming, Molly, Maggie, Kavya, Anjali, Kayla, Belle, Shahir, Lakshmi, Kym
    • Excused: Bowen
  • Agenda:
    • Discuss:
      • Lab Website (Meeting Notes)
      • Gilmore Lab Group GitHub Repository
      • using R Studio to update the lab website
  • Homework:

    • Create Github account and send username to discord channel

    • Write or update your biography make sure to use at least one link formatted for R (e.g. I work in the [Gilmore Lab](https://gilmore-lab.github.io/) at Penn State.). Send completed biography to the Lab Email

    • pick 3 courses in Datacamp and send to Andrea via discord

    • Global Protect (instructions in ‘Helpful Computer Information’ above) needs to be run when off campus BEFORE logging into R Studio Server - Install this if you don’t have it already

    • Create account/log on to TLT R Studio Server - link mid page

    • Check out data repositories.

    • Outstanding Training: All instructions are on Asana

      • Molly: Reporting Child Abuse, Compliance Training, Title IX, Create GitHub account, Create Biography
      • Anjali: Compliance Training, Title IX
      • Shahir: Clery Act, Reporting Child Abuse
      • Lakshmi: Compliance Training, Title IX
      • Kym: Create Biography

1/26/2022

  • Attending: Rick, Andrea, Yiming, Molly, Maggie, Bowen, Kavya, Anjali, Kayla, Belle, Shahir, Lakshmi, Kym
    • Missing: Sara
  • Agenda:
    • Discuss: Soska, K. C., Xu, M., Gonzalez, S. L., Herzberg, O., Tamis-LeMonda, C. S., Gilmore, R. O., & Adolph, K. E. (2021). (Hyper)active data curation: A video case study from behavioral science. Journal of Escience Librarianship, 10(3). https://doi.org/10.7191/jeslib.2021.1208
      • PLAY about transparently publishing the process
      • consistent naming schemes
      • KoBoToolbox - moves files around and gathers files from video, survey, and decibel
  • Notes:
    • Meeting notes will be kept here
    • Communication is Key!
      • Discord is used in between meetings
      • send a note here if you will miss a meeting.
  • To Do:
    • Accept the invite sent to your PSU account to join the class on Datacamp.
    • Log in, Pick 3 R courses on Datacamp to complete by the end of the semester, and send the list of courses to me via Discord
      • Take Introduction to R and Intermediate R before taking anything else.
    • Asana Tasks:
      • Training
      • Write or update your biography make sure to use at least one link formatted for R (e.g. I work in the [Gilmore Lab](https://gilmore-lab.github.io/) at Penn State.)

1/19/2022

  • Attending: Rick, Andrea, Yiming, Molly, Maggie, Bowen, Kavya, Anjali, Kayla, Belle, Shahir, Lakshmi
    • Missing: Sara, Kym
  • Agenda
    • Introduction of lab members
    • discuss PLAY
  • To Do:
    • Training Assigned in Asana
    • Join Discord
    • Read: Soska, K. C., Xu, M., Gonzalez, S. L., Herzberg, O., Tamis-LeMonda, C. S., Gilmore, R. O., & Adolph, K. E. (2021). (Hyper)active data curation: A video case study from behavioral science. Journal of Escience Librarianship, 10(3). https://doi.org/10.7191/jeslib.2021.1208